PhiTools References

The PhiTools software package is used in various scientific areas from experimental to pharmacological pre-clinical and clinical applications. An important list of peer-reviewed articles has already been published in international scientific journals, books or congress abstracts. Several additional works are in progress.


topInternational journal articles

  1. Vienne J, Lecciso G, Constantinescu I, Schwartz S, Franken P, Heinzer R, Tafti M. Sleep. 35(8):1071-83 (2012).
    Differential effects of sodium oxybate and baclofen on EEG, sleep, neurobehavioral performance, and memory.
  2. Westerberg CE, Mander BA, Florczak SM, Weintraub S, Mesulam MM, Zee PC, Paller KA. J. Int. Neuropsychol. Soc. 3:1-11 (2012).
    Concurrent impairments in sleep and memory in amnestic mild cognitive impairment.
  3. Picot A, Whitmore H, Chapotot F. Conf. Proc. IEEE Eng. Med. Biol. Soc. 2011:4824-7 (2011).
    Automated detection of sleep EEG slow waves based on matching pursuit using a restricted dictionary.
  4. Charbonnier S, Zoubek L, Lesecq S, Chapotot F. Comp. Biol. Med. 41(6):380-389 (2011).
    Self-evaluated automatic classifier as a decision-support tool for sleep/wake staging.
  5. Zoubek L, Chapotot F. Comm. Comput. Inform. Sci. 188:106-117 (2011).
    Automatic classification of sleep/wake stages using two-step system.
  6. Merica H, Fortune RD. PLoS One. 6(8):e23593 (2011).
    The neuronal transition probability (NTP) model for the dynamic progression of non-REM sleep EEG: The role of the suprachiasmatic nucleus.
  7. Tasali E, Chapotot F, Leproult R, Whitmore H, Ehrmann DA. J. Clin. Endocrinol. Metab. 96(2):365-74. (2011).
    Treatment of obstructive sleep apnea improves cardiometabolic function in young obese women with polycystic ovary syndrome.
  8. Zeitzer JM, Ruby NF, Fisicaro RA, Heller HC. PLoS One. 6(7):e22078 (2011).
    Response of the human circadian system to millisecond flashes of light.
  9. Zeitzer JM, Fisicaro RA, Grove ME, Mignot E, Yesavage JA, Friedman L. Psychiat. Res. 652(1-3):60-4 (2011).
    Faster REM sleep EEG and worse restedness in older insomniacs with HLA DQB1*0602.
  10. Drouet JB, Rousset C, Maury R, Michel V, Buguet A, Cespuglio R, Canini F. Eur. J. Pharmacol. 6(7):e22078 (2011).
    Single administration of metyrapone modifies sleep-wake patterns in the rat.
  11. Mpandzou G, Cespuglio R, Ngampo S, Bandzouzi B, Bouteille B, Vincendeau P, Buguet A. J. Neurol. Sci. 305(1-2):112-5 (2011).
    Polysomnography as a diagnosis and post-treatment follow-up tool in human African trypanosomiasis: a case study in an infant.
  12. Sforza E, Marcoz JP, Foletti G. Epileptic Disord. 12(3):228-31 (2010).
    Sleep spindle activity in double cortex syndrome: a case report.
  13. Caufriez A, Leproult R, L'Hermite-Baleriaux M, Kerkhofs M, Copinschi G. J. Clin. Endocrinol. Metab. 96(4):614-23 (2011).
    Progesterone prevents sleep disturbances and modulates GH, TSH, and melatonin secretion in postmenopausal women.
  14. Copinschi G, Nedeltcheva A, Leproult R, Morselli LL, Spiegel K, Martino E, Legros JJ, Weiss RE, Mockel J, Van Cauter E. J. Clin. Endocrinol. Metab. 95(5):2195-202 (2011).
    Sleep disturbances, daytime sleepiness, and quality of life in adults with growth hormone deficiency.
  15. Tasali E, Chapotot F, Leproult R, Whitmore H, Ehrmann D. J. Clin. Endocrinol. Metab. 96(2):365-74 (2010).
    Treatment of obstructive sleep apnea improves cardiometabolic function in young obese women with polycystic ovary syndrome.
  16. Mander BA, Reid K, Baron KG, Tjoa T, Parrish TB, Paller KA, Gitelman DR, Zee PC. J. Neurosci. 30(7):2686-2693 (2010).
    EEG measures index neural and cognitive recovery from sleep deprivation.
  17. Ray L, Fogel S, Smith C, Peters KR. J. Sleep Res. 19(2):374-8 (2010).
    Validating an automated sleep spindle detection algorithm using an individualized approach.
  18. Chapotot F, Becq G. Int. J. Adapt. Contr. Signal Process. 24(5):409-423 (2009).
    Automated sleep-wake staging combining robust feature extraction, artificial neural network classification, and flexible decision rules.
  19. Trousselard M, Cian C, Barraud PA, Ferhani O, Roux A, Claverie D, Canini F, Baert P. Aviat. Space Environ. Med. 80(10):850-6 (2009).
    Physiological and psychological effects of escape from a sunken submarine on shore and at sea.
  20. Sforza E, Chapotot F, Pigeau R, Buguet A. Clin. Neurophysiol. 119:1590-11599 (2008).
    Time of night and first night effects on arousal response in healthy adults.
  21. Dauvilliers Y, Bisser S, Chapotot F, Vatunga G, Cespuglio R, Josenando T, Buguet A. Sleep 31(3):348-354 (2008).
    Hypocretin and Human African Trypanosomiasis.
  22. Tasali E, Leproult R, Ehrmann DA, Van Cauter E. Proc. Natl. Acad. Sci. USA Jan 2 (2008).
    Slow-wave sleep and the risk of type 2 diabetes in humans.
  23. Zoubek L, Charbonnier S, Lesecq S, Buguet A, Chapotot F. Biomed. Signal Process. Control 2:171-179 (2007).
    Feature selection for sleep/wake stages classification using data driven methods.
  24. Sloan EP, Maunder RG, Hunter JJ, Moldofsky H. Biopsychosoc. Med. 1:20 (2007).
    Insecure attachment is associated with the alpha-EEG anomaly during sleep.
  25. Quera Salva MA, Vanier B, Laredo J, Hartley S, Chapotot F, Moulin C, Lofaso F, Guilleminault C. Int. J. Neuropsychopharmacol. 10(5):691-6 (2007).
    Major depressive disorder, sleep EEG and agomelatine: an open-label study.
  26. Latta F, Leproult R, Tasali E, Hofmann E, Van Cauter E. Sleep 28(12):1525-34 (2005).
    Sex differences in delta and alpha EEG activities in healthy older adults.
  27. Merica H, Fortune RD. Cereb. Cortex 15(7):877-84 (2005).
    Spectral power time-courses of human sleep EEG reveal a striking discontinuity at ~18Hz marking division between NREM-specific and wake/REM-specific fast frequency activity.
  28. Buguet A, Bisser S, Losenando T, Chapotot F, Cespuglio R. Acta Trop. 93(1):107-17 (2005).
    Sleep structure: a new diagnostic tool for stage determination in sleeping sickness.
  29. Bourdon L, Coli S, Loriga G, Taccini N, Gros B, Gemignani A, Cianflone D, Chapotot F, Dittmar A, Paradiso R. Comput. Cardiol. 32:615-18 (2005).
    First Results with the Wealthy Garment ElectroCardiogram Monitoring System.
  30. Darsaud A, Bourdon L, Mercier S, Chapotot F, Bouteille B, Cespuglio R, Buguet A. Sleep 27(1):42-6 (2004).
    Twenty-four hour disruption of the sleep-wake cycle and sleep-onset REM-like episodes in a rat model of African trypanosomiasis.
  31. Cervena K, Dauvilliers Y, Espa F, Touchon J, Matousek M, Billiard M, Besset A. J. Sleep Res. 13:385-93 (2004).
    Effect of cognitive behavioural therapy for insomnia on sleep architecture and sleep EEG power spectra in psychophysiological insomnia.
  32. Merica H, Fortune RD. Sleep Med. Rev. 8(6):473-85 (2004).
    State transitions between wake and sleep, and within the ultradian cycle, with focus on the link to neuronal activity.
  33. Lavoie S, De Bilbao F, Haba-Rubio J, Ibanez V, Sforza E. Clin. Neurophysiol. 115(10):2236-46 (2004).
    Influence of sleep stage and wakefulness on spectral EEG activity and heart rate variations around periodic leg movements.
  34. Sforza E, Chapotot F, Lavoie S, Roche F, Pigeau R, Buguet A. Clin. Neurophysiol. 115(11):2242-5 (2004).
    Heart rate activation during spontaneaous arousals from sleep: effect of sleep deprivation.
  35. Sforza E, Chapotot F, Pigeau R, Naitoh P, Buguet A. Sleep 27(6):1068-75 (2004).
    Effects of sleep deprivation on spontaneaous arousals in humans.
  36. Roky R, Chapotot F, Taoudi-Benchekroun M, Hakkou F, Elkhalifi H, Benaji B, Buguet A. J. Sleep Res. 12(2):95-101 (2003).
    Daytime sleepiness during Ramadan intermittent fasting: polysomnographic and quantitative waking EEG study.
  37. Leproult R, Colecchia E, Berardi Am, Stickgold R, Kosslyn Sm, Van Cauter E. Am. J. Physiol. Regul. Integr. Comp. Physiol. 284(2):R280-90 (2003).
    Individual differences in subjective and objective alertness during sleep deprivation are stable and unrelated.
  38. Merica H, Fortune RD. Cereb. Cortex13:1044_50 (2003).
    A unique pattern of sleep structure is found to be identical at all cortical sites: a neurobiological interpretation.
  39. Chapotot F, Pigeau R, Canini F, Bourdon L, Buguet A. Psychopharmacol. (Berl) 166(2):127-138 (2003).
    Distinctive effects of modafinil and d-amphetamine on the homeostatic and circadian modulation of the human waking EEG.
  40. Sforza E, Jouny C, Ibanez V. Clin. Neurophysiol. 113(6):883-91 (2003).
    Time-dependent variation in cerebral and autonomic activity during periodic leg movements in sleep: implications for arousal mechanisms.
  41. Buguet A, Bouteille B, Cespuglio R, Bisser S, Chapotot F, Bourdon L, Vincendeau M, Radomski MW, Dumas M. Med. Trop. 63(3):1-5 (2003).
    Icon PDF La maladie du sommeil: la recherche oubliee.
  42. Sforza E, Grandin S, Jouny C, Rochat T, Ibanez V. Eur. Respir. J. 19:645-652 (2002).
    Is waking electroencephalographic activity a predictor of daytime sleepiness in sleep-related Breathing disorders?
  43. Roky R, Chapotot F, Hakkou F, Benchekroun M, Buguet A. J. Sleep Res. 10(4):319-327 (2001).
    Sleep during Ramadan intermittent fasting.
  44. Buguet A, Bourdon L, Bisser S, Chapotot F, Radomski MW, Dumas M. Med. Trop. 61(4-5):328-339 (2001).
    Icon PDF La maladie du sommeil: trouble majeur des rythmes circadiens.
  45. Chapotot F, Buguet A, Gronfier C, Brandenberger G. Neuroendocrinology 73(5):312-321 (2001).
    HPA axis activity is related to the level of central arousal: effect of sleep deprivation on the association of high frequency waking EEG with cortisol release.
  46. Gaudreau H, Morettini J, Lavoie HB, Carrier J. Neurobiol. Aging 22(3):461-8 (2001).
    Effects of a 25-h sleep deprivation on daytime sleep in the middle-aged.
  47. Chapotot F, Jouny C, Buguet A, Brandenberger G. Neuroreport 11(10):2223-2227 (2000).
    High frequency waking EEG: reflection of a slow ultradian rhythm in arousal.
  48. Sforza E,Jouny C, Ibanez I. Clin. Neurophysiol. 111:1611-1619 (2000).
    Cardiac activation during arousal in humans: further evidence for hierarchy in the arousal response.
  49. Jouny C, Chapotot F, Merica H. Neuroreport 11(17):3667-3671 (2000).
    EEG spectral activity during paradoxical sleep: further evidence for cognitive processing.
  50. Chapotot F, Gronfier C, Jouny C, Muzet A, Brandenberger G. J. Clin. Endocrinol. Metab. 83(12):4263-4268 (1998). Pharmacia & Upjohn Award.
    Cortisol secretion is related to electro-encephalographic alertness in human subjects during daytime wakefulness.

topBooks, and Congress abstracts

  1. Warby S, Moore HE, Carrillo O, Faraco J, Lin L, Peppard PE, Young T, Mignot E. Sleep 35(Suppl):A16 (2012).
    Genome-wide association study and confounders of sigma power and sleep spindles.
  2. Nader R, Smith C, Sabbagh MA. Sleep 35(Suppl):A21 (2012).
    Evidence of a superfast spindle in the 16-19Hz frequency range.
  3. Smith C, Nader R, Murkar A, Sabbagh MA. Sleep 35(Suppl):A22 (2012).
    Spindle density varies with age among three spindle types (11-13.5Hz, 13.5-16Hz, 16-18.5Hz).
  4. Nader R, Smith C, Murkar A, Sabbagh MA. Sleep 35(Suppl):A22 (2012).
    Spindle duration varies among three spindle types and with age.
  5. Smith C, Nader R, Murkar A, Sabbagh MA. Sleep 35(Suppl):A22 (2012).
    Spindle amplitude varies with age among three spindle types (11-13.5Hz, 13.5-16Hz, 16-18.5Hz).
  6. Mander BA, Zhu A, Lu BS, Saletin JM, Ancoli-Israel S, Jagust WJ, Walker M. Sleep 35(Suppl):A23 (2012).
    Age-related impairments of memory and fast sleep spindles are mediated by deterioration of cortico-thalamic white matter pathways.
  7. Picot A, Whitmore H, Chapotot FSleep 35(Suppl):A131 (2012).
    Automated knowledge-based detection of cortical slow waves in sleep EEG using matching pursuit.
  8. McGee-Koch LL, Malkani R, Reid KJ, Chapotot F, Whitmore H, Zee P. Sleep 35(Suppl):A278 (2012).
    The temporal distribution of slow wave activity during sleep is an objective marker of subjective daytime sleepiness.
  9. Picot A, Whitmore H, Chapotot F. The Engineering in Medicine and Biology Conference (2011).
    Automated detection of sleep EEG slow waves based on matching pursuit using a restricted dictionary.
  10. Picot A, Van Cauter E, Chapotot F. Sleep 34(Suppl):A324 (2011).
    Validation of a novel sleep EEG slow wave automated detection algorithm.
  11. Zoubek L, Charbonnier S, Lesecq S, Buguet A, Chapotot F. Proceedings of the 17th World Congress, The International Federation of Automatic Control 5227:5232 (2008).
    Icon PDF A two-step sleep/wake stages classifier taking into account artifacts in the polysomnographic signals.
  12. Chapotot F, Zoubek L, Becq G. Sleep 31(Suppl):A328 (2008).
    Artificial neural network scoring of human sleep-wake stages combining short-epoch feature extraction and post-processing inference rules.
  13. Zoubek L, Charbonnier S, Lesecq S, Buguet A, Chapotot F. Modeling and Control in Biomedical Systems6(1):117-122 (2006).
    Knowledge extraction about sleep/wake stages using data driven methods.
  14. Buguet A, Chapotot F, Bisser S, Cespuglio R, Bouteille B. In: Sleep: a comprehensive handbook Lee-Chiong LT (Ed) Wiley, Hoboken 163-173 (2006).
    Sleeping sickness: human African trypanosomiasis.
  15. Becq G, Charbonnier S, Chapotot F, Buguet A, Bourdon L, Baconnier P. In: Softcomputing in Knowledge Discovery - Methods and Applications Halgamuge S and Wang L (Eds) Springer Verlag. 8 113-127 (2005).
    Icon PDF Comparison between five classifiers for automatic scoring of human sleep recordings.
  16. Buguet A, Bouteille B, Cespuglio R, Chapotot F. In: Les troubles du sommeil Billard M and Dauvilliers Y (Eds) Masson, Paris 309-323 (2005).
    Maladies infectieuses et sommeil.
  17. Buguet A, Bisser S, Josenando T, Chapotot F, Cespuglio R, Dumas M. Rev. Neurol. 2S:151 (2005).
    Polysomnographie: diagnostic non invasif du stade nerveux de la trypanosomose humaine africaine (THA).
  18. Cervena K, Dauvilliers Y, Espa F, Touchon J, Matousek M, Billiard M, Besset A. J. Sleep Res. 13(1):129 (2004). ESRS Sanofi-Aventis Awards.
    Effect of cognitive behavioural therapy for insomnia on sleep architecture and sleep EEG power spectra in psychophysiological insomnia.
  19. Leproult R, Tasali E, Saaresranta T, Pannain S, Miller J, Alverdy E, Van Cauter E. J. Sleep Res. 13(1):444 (2004). ESRS H Kristbjarnarson's Awards.
    Morbidly obese women have less slow wave sleep than their age and gender matched controls.
  20. Buguet A, Cespuglio R, Bisser S, Chapotot F, Josenando T, Dumas M. J. Sleep Res. 13(1):109 (2004).
    Polysomnography, a new means for human African trypanosomiasis stage diagnosis.
  21. Chevrier C, Chapotot F, Darsaud C, Cespuglio R, Buguet A, Bourdon L. J. Sleep Res. 13(1):135 (2004).
    Chronobiological alterations in sleep-wake stages and core temperature in experimental african trypanosomiasis.
  22. Quera-Salva M, Laredo J, Chapotot F, Vannier B, Bohic M, Moulin C, Morlat D, Bodinat C, Lofaso F, Guilleminault C. J. Sleep Res. 13(1):593 (2004).
    Sleep EEG during a major depression episode in patients consulting for a sleep/wake complaint.
  23. Chapotot F, Becq G, Sforza E, Buguet A. J. Sleep Res. 13(1):132(2004).
    Automatic sleep-wake stage scoring using artificial neural networks: optimisation and evaluation.
  24. Chapotot F, Bisser S, Panzo A, Josenando T, Buguet A. J. Sleep Res. 13(1):13 (2004).
    EEG slow-wave activity: a potential marker of the nervous phase of human African trypanosomiasis.
  25. Becq G, Charbonnier S, Chapotot F, Buguet A, Bourdon L, Baconnier P. In: Proceedings of the 1st international conference on fuzzy systems and knowledge discovery: Computational intelligence for the E-age Wang L, Halgamuge S, Yao X (Eds) Orchid Country Club (1) pp166 (2002).
    Icon PDF Comparison between five classifiers for automatic scoring of human sleep recordings.
  26. Chapotot F, Pigeau R, Naitoh P, Buguet A. Methods and Findings in Experimental and Clinical Pharmacology 24D:154 (2002). IPEG-PAREXEL Young Scientist Awards
    Distinctive effects of modafinil and d-amphetamine on the homeostatic and circadian regulation of the human waking EEG.
  27. Chapotot F, Buguet A, Brandenberger G. Stress 5:84 (2002).
    Alteration of the ultradian coupling between waking EEG arousal and HPA axis activity during sleep deprivation.
  28. Sforza E, Jouny C, Ibanez V. J. Sleep Res. 11(1):416 (2002).
    Temporal evolution of arousal response during periodic leg movements: Evidence for circadian influence.
  29. Buguet A, Tapie P, Chapotot F, Banzet S, Bogui P, Cespuglio R. J. Sleep Res. 11(1):30 (2002).
    Sleep in tropical Africa: At the laboratory in villages without electrical power.
  30. Buguet A, Tapie P, Bisser S, Chapotot F, Doua F, Cespuglio R. J. Sleep Res. 11(1):29 (2002).
    Sleep in sleeping sickness patients under ambulatory monitoring.
  31. Chapotot F, Buguet A, Brandenberger G. b>J. Sleep Res. 11(1):36 (2002).
    Sleep deprivation alters the ultradian coupling between waking EEG arousal and HPA axis activity.
  32. Chapotot F, Pigeau R, Buguet A. Actas di Fisilogia 7:254 (2001).
    Distinctive effects of Modafinil and d-amphetamine on the human EEG power spectrum during 60 uninterrupted waking hours.
  33. Darsaud A, Mercier S, Chapotot F, Bouteille B, Chevrier C, Canini F, Bourdon L, Cespuglio R, Dumas M, Buguet A. Med. Trop. 61(3):280 (2001).
    Rythmes circadiens de la vigilance dans la trypanosomose africaine: étude numérique chez le rat.
  34. Jouny C, Chapotot F, Merica H. Sleep Res. Online 2(1):47 (1999).
    REM-related EEG spectral changes during paradoxical sleep in humans.
  35. Chapotot F, Jouny C, Buguet A, Brandenberger G. Sleep Res. Online 2(1):252 (1999).
    Temporal relationships between EEG frequency bands in awake man.
  36. Chapotot F, Jouny C, Buguet A, Brandenberger G. Sleep Res. Online 2(1):176 (1999).
    Increased HPA activity during sleep deprivation in man.
  37. Chapotot F, Gronfier C, Jouny C, Muzet A, Brandenberger G. J. Sleep Res. 7(2):44 (1998).
    Cortisol secretion is temporally related to EEG beta activity during wakefulness in man.

topMultimedia

  1. Chapotot F.
    Icon PPS Methods and Tools for a quantitative study of the sleep/wake cycle.
  2. Chapotot F. Journees dediees aux applications pharmaceutiques et medicales avec l'environnement MATLAB. Sevres (2005).
    Icon PPS PRANA : Une boite à outils MATLAB pour l'analyse des enregistrements polygraphiques.
  3. Tung J, Oxenford R. MATLAB News and Notes Spring (2001).
    Analyzing data for sleep research.

PhiTools provides advanced software solutions and services for biosignal processing, sleep analysis, psychophysiological research and clinical trials. PhiTools, software tools and services for psychophysiology, polysmonography and chronobiology.